Syncing project tasks with Task lists

Hi,

I am syncing tasks from microsoft project file to SharePoint tasks list. However, there is a possibility that my project file will exceed more than 1000 tasks over time and one of the limitation with SharePoint & Project syncing is that the project file that am syncing with SharePoint can't exceed more than 1000 tasks. Microsoft says that I need to use a brand new project file to sync the 1000+ tasks but what about the dependencies? say for eg: For task 1001, if I have a dependency on task 1000, do I have to set up the dependencies in SharePoint?

Please help,

techie